We are developing Cytoscape Automation features to enable the Cytoscape community to economically create novel workflows using state of the art tools such as Python/Jupyter, R/RStudio and GenomeSpace while This page describes the Cytoscape Desktop roadmap and inroads into the wider Cloud Ecosystem.Ĭytoscape has traditionally relied on the Cytoscape Apps mechanism for defining and delivering novel calculations and workflows, and the Cytoscape App Store has proven successful at collectingĪnd disseminating them. Feel free to contribute to this discussion ourĬytoscape is going down a number of roads simultaneously: This page explains our roadmap for future deliveries and activities. The CytoscapeĪpp developer community has upgraded a number of v2 plugins into v3 apps, and has contributed a steady stream of new apps ().Īs of late 2016, our efforts have been rewarded, as Cytoscape has become more popular than ever – Since v3, we have focused on addressing outstanding bugs and upgrading a number of user-facing features, including visual styles (VizMapper), fast node filtering, network capacity, and overall speed and UI consistency. Support for third party plugin applications (via the App Store, semantic versioning disciplines, published APIs, and code management via OSGi). The most recent major sprint ended in 2014 with the release of Cytoscape v3, which refactored major internal data models and greatly improved Cytoscape was initially released in 2002, and has undergone numerous development sprints.
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